Problem with my PC

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Hello,

around a month ago i hade trouble coming into my computer, i believe that i hade to much memory on my original hardrive that hade all of my standard windows stuff.
My uncle and my father managed to fix it (i don't know how)
Now i have another problem. All the things that i downloaded to my new hard drive a lot of time to turn on and some i can't even turn on and i don't know why.

I have a lot of free room on my standard hard drive so it isn't that and my new hard drive has a pretty good rpm. (don't remember how much)


I didn't find the right solution from the internet.
References:
http://www.techist.com/forums/f77/problem-my-pc-279588/
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hay bby show bob and vagene for me pleas
I have the same problem with you, what do I do to fix it? Can you tell me?